Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKG98_320Hypothetical protein. (379 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16p (L10e); Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.778
argS
Arginyl-tRNA synthetase.
   
    0.505
AKG98_3255
Protein YcgL.
  
     0.500
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.478
hflD
Hypothetical protein.
 
  
 0.474
AKG98_639
Putative alpha helix protein; Belongs to the UPF0307 family.
  
     0.446
AKG98_350
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
   
 0.431
AKG98_1446
Benzoate transport protein.
  
    0.427
AKG98_354
Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.
 
    0.417
dsbB
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
   
 0.403
Your Current Organism:
Moritella sp. JT01
NCBI taxonomy Id: 756698
Other names: M. sp. JT01
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