Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN04553.1KEGG: hmu:Hmuk_3058 hypothetical protein. (143 aa)    
Predicted Functional Partners:
AEN04554.1
KEGG: hmu:Hmuk_3059 hypothetical protein.
       0.897
AEN04552.1
PFAM: Type II secretion system protein E; KEGG: hbo:Hbor_24650 ATPase, type IV secretory pathway virb11 component like protein.
       0.808
AEN04551.1
PFAM: Type II secretion system F domain; KEGG: hbo:Hbor_24640 hypothetical protein.
       0.795
AEN04550.1
KEGG: hvo:HVO_0750 hypothetical protein.
       0.693
AEN04548.1
KEGG: hbo:Hbor_24610 hypothetical protein.
       0.646
AEN04547.1
KEGG: hbo:Hbor_24600 hypothetical protein.
       0.644
AEN04549.1
KEGG: hmu:Hmuk_3054 hypothetical protein.
       0.639
cetZ
Tubulin/FtsZ GTPase; Involved in cell shape control; Belongs to the CetZ family.
       0.596
AEN04546.1
KEGG: hwa:HQ1184A hypothetical protein.
       0.527
AEN04545.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: hmu:Hmuk_3050 NAD-dependent epimerase/dehydratase.
       0.497
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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