Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN04663.1KEGG: hwa:HQ3111A hypothetical protein. (99 aa)    
Predicted Functional Partners:
AEN04662.1
TIGRFAM: Folate-binding, YgfZ; KEGG: hbo:Hbor_27940 aminomethyltransferase; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel.
       0.870
AEN04664.1
KEGG: hbo:Hbor_27920 hypothetical protein.
       0.846
AEN04665.1
KEGG: hwa:HQ3109A hypothetical protein.
       0.712
AEN04661.1
LVIVD repeat-containing protein; PFAM: LVIVD; KEGG: hvo:HVO_0405 NifU-like domain-containing protein.
       0.512
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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