Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEN04732.1KEGG: hbo:Hbor_14080 hypothetical protein. (408 aa)    
Predicted Functional Partners:
AEN04733.1
PFAM: UspA; KEGG: hbo:Hbor_14090 universal stress protein UspA-like protein.
       0.784
AEN05694.1
KEGG: hma:pNG6077 hypothetical protein.
  
     0.650
AEN05222.1
FG-GAP repeat protein; PFAM: FG-GAP; KEGG: hla:Hlac_1846 FG-GAP repeat protein.
 
     0.619
AEN04569.1
Permease; KEGG: hla:Hlac_1131 permease.
 
     0.554
AEN06374.1
PFAM: NHL repeat; KEGG: hvo:HVO_0336 hypothetical protein.
  
     0.512
AEN06696.1
KEGG: hwa:HQ3226A hypothetical protein.
  
     0.458
AEN04731.1
KEGG: hla:Hlac_2247 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal.
       0.451
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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