Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN05141.1KEGG: hbo:Hbor_22170 hypothetical protein. (190 aa)    
Predicted Functional Partners:
AEN05140.1
KEGG: hbo:Hbor_22160 hypothetical protein.
       0.720
AEN05137.1
PFAM: Methyltransferase type 11; KEGG: hla:Hlac_1030 methyltransferase type 11.
       0.712
AEN05139.1
KEGG: hla:Hlac_1032 type II secretion system protein E; manually curated; PFAM: Type II secretion system protein E.
       0.662
AEN05138.1
PFAM: Type II secretion system F domain; KEGG: hvo:HVO_1033 type IV pilus biogenesis complex membrane subunit.
       0.660
AEN06013.1
KEGG: hvo:HVO_1038 uracil DNA glycosylase.
       0.422
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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