Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN05412.1KEGG: hbo:Hbor_16670 hypothetical protein. (55 aa)    
Predicted Functional Partners:
psmB
Proteasome endopeptidase complex, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.787
AEN05223.1
UPF0212 protein; KEGG: hbo:Hbor_16680 hypothetical protein; HAMAP: Uncharacterised protein family UPF0212; PFAM: Uncharacterised protein family UPF0212; Belongs to the UPF0212 family.
       0.677
AEN05221.1
KEGG: hla:Hlac_0868 transcriptional regulator, XRE family; PFAM: Cystathionine beta-synthase, core; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; Cystathionine beta-synthase, core.
       0.453
AEN05411.1
KEGG: hla:Hlac_1172 hypothetical protein.
       0.442
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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