STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN05609.1Transglutaminase domain-containing protein; KEGG: hbo:Hbor_05400 transglutaminase-like enzyme, cysteine protease; PFAM: Transglutaminase-like; SMART: Transglutaminase-like. (760 aa)    
Predicted Functional Partners:
AEN05608.1
PFAM: Protein of unknown function DUF58; KEGG: hbo:Hbor_05390 hypothetical protein.
 
     0.950
AEN05607.1
PFAM: ATPase associated with various cellular activities, AAA-3; KEGG: hbo:Hbor_05380 MoxR-like ATPase.
 
  
 0.932
AEN04979.1
PFAM: ATPase associated with various cellular activities, AAA-3; KEGG: hut:Huta_2421 ATPase associated with various cellular activities AAA_3.
 
  
 0.687
AEN05610.1
TIGRFAM: Archaeal/bacterial translation initiation factor SUI1; HAMAP: Translation factor SUI1-like protein; KEGG: hbo:Hbor_05410 translation initiation factor 1 (eif-1/SUI1); PFAM: Translation initiation factor SUI1; Belongs to the SUI1 family.
       0.653
AEN06726.1
Conserved repeat domain protein; KEGG: hbo:Hbor_25740 hypothetical protein; TIGRFAM: Protein of unknown function DUF11; PFAM: Protein of unknown function DUF58; Protein of unknown function DUF11.
 
  
 0.640
uvrB
UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...]
    
  0.554
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
    
  0.550
AEN04669.1
KEGG: hbo:Hbor_27990 excinuclease ABC subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like.
    
  0.513
AEN05606.1
Hypothetical protein; KEGG: tsc:TSC_c15780 N-6 DNA methylase family.
 
     0.511
AEN05611.1
KEGG: hut:Huta_0492 hypothetical protein.
       0.439
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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