Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEN06219.1KEGG: hbo:Hbor_17510 hypothetical protein. (96 aa)    
Predicted Functional Partners:
AEN06220.1
PFAM: UspA; KEGG: hla:Hlac_1496 UspA domain protein.
       0.601
AEN06218.1
TIGRFAM: Conserved hypothetical protein CHP03663; KEGG: hvo:HVO_1479 dolichyl-phosphate-mannose-proteinmannosyltransfe rase.
       0.563
AEN06221.1
PFAM: Ferredoxin; KEGG: hla:Hlac_1430 ferredoxin.
       0.472
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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