Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl39ePFAM: Ribosomal protein L39e; KEGG: hwa:HQ3424A 50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family. (50 aa)    
Predicted Functional Partners:
rpl31e
KEGG: hmu:Hmuk_1233 ribosomal protein L31e; HAMAP: 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
 
 
 0.999
rpl10
Acidic ribosomal protein P0-like protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.996
rps14
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.989
rps17e
KEGG: hbo:Hbor_11080 SSU ribosomal protein s17e; HAMAP: Ribosomal protein S17e; PFAM: Ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
 
   0.987
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
  
 
 0.987
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
   0.985
rpl24e
50S ribosomal protein L24e; Binds to the 23S rRNA.
  
   0.984
rpl2
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
   0.980
AEN05867.1
PFAM: Protein of unknown function DUF1610; KEGG: hla:Hlac_2340 protein of unknown function DUF1610.
  
   0.979
rpl24
Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
   
   0.979
Your Current Organism:
halophilic archaeon DL31
NCBI taxonomy Id: 756883
Other names: h. archaeon DL31
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