STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTZ23_11365Unannotated protein. (185 aa)    
Predicted Functional Partners:
rpmF
Unannotated protein; Belongs to the bacterial ribosomal protein bL32 family.
 
  
 0.967
rpsC
Unannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.890
rplK
Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.834
rplD
Unannotated protein; Forms part of the polypeptide exit tunnel.
  
    0.825
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.819
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
  
    0.819
rpsB
Unannotated protein; Belongs to the universal ribosomal protein uS2 family.
  
    0.816
infC
Unannotated protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
    0.816
rplA
Unannotated protein; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
  
 0.810
trmD
Unannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
    0.810
Your Current Organism:
Acinetobacter indicus
NCBI taxonomy Id: 756892
Other names: Acinetobacter guangdongensis, Acinetobacter guangdongensis Feng et al. 2014, Acinetobacter indicus Malhotra et al. 2012, Acinetobacter sp. 1NM-4, Acinetobacter sp. B18, Acinetobacter sp. CMG11-2, Acinetobacter sp. CMG27-3, Acinetobacter sp. CMG3-2, Acinetobacter sp. FS35-1, Acinetobacter sp. FS42-2, Acinetobacter sp. FS46-2, Acinetobacter sp. FS55-1, Acinetobacter sp. MM111-1, Acinetobacter sp. MM112-2, Acinetobacter sp. MM114-2, Acinetobacter sp. MMS32-1, Acinetobacter sp. MMS36-1-1, Acinetobacter sp. MMS9-2, CCM 7832, CCTCC AB 2014199 [[Acinetobacter guangdongensis]], CIP 110367, DSM 25388, GIMCC 1.656 [[Acinetobacter guangdongensis]], KCTC 42012 [[Acinetobacter guangdongensis]], strain 1NM-4 [[Acinetobacter guangdongensis]], strain A648
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