STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106153534D-aspartate oxidase. (340 aa)    
Predicted Functional Partners:
LOC106177455
Omega-amidase NIT2.
   
 
 0.906
LOC106165438
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.840
LOC106171088
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
     
 0.820
LOC106176584
Aspartate aminotransferase.
     
 0.723
LOC106175723
Aspartate aminotransferase.
     
 0.699
LOC106171580
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.690
LOC106173354
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.690
LOC106158667
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.618
LOC106160475
Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial-like.
    
 0.618
LOC106169721
Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1.
    
 0.618
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.