STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106155095Cell wall protein IFF6-like. (821 aa)    
Predicted Functional Partners:
LOC106154191
pre-mRNA-processing factor 6 isoform X1.
   
 0.669
LOC106180025
116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1.
   
 0.642
LOC106176064
Splicing factor 3B subunit 1.
   
 0.568
LOC106165133
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.566
LOC106172199
DNA ligase 1-like.
   
 0.557
LOC106174465
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 
 0.553
LOC106173952
Splicing factor 3B subunit 3.
   
 0.550
LOC106168353
ATP synthase subunit d, mitochondrial.
   
   0.547
LOC106171418
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.546
LOC106163581
Protein mago nashi homolog 2.
    
 0.536
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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