LOC106156234 protein (Lingula anatina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106156234

SLAIN motif-containing protein 2-like isoform X1. (447 aa)

Predicted Functional Partners:

LOC106152567

0.918

LOC106164507

0.918

LOC106165228

0.645

LOC106152466

0.614

LOC106170152

0.577

LOC106176867

0.551

LOC106156681

0.507

LOC106163482

0.507

LOC106172199

0.507

LOC106158455

0.499

Your Current Organism:

Lingula anatina

NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106152466	LOC106156234	A0A1S3H7P6	A0A1S3HP71	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	SLAIN motif-containing protein 2-like isoform X1.	0.614
LOC106152466	LOC106170152	A0A1S3H7P6	A0A1S3J4I8	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
LOC106152567	LOC106156234	A0A1S3H6L7	A0A1S3HP71	Cytoskeleton-associated protein 5 isoform X1.	SLAIN motif-containing protein 2-like isoform X1.	0.918
LOC106156234	LOC106152466	A0A1S3HP71	A0A1S3H7P6	SLAIN motif-containing protein 2-like isoform X1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.614
LOC106156234	LOC106152567	A0A1S3HP71	A0A1S3H6L7	SLAIN motif-containing protein 2-like isoform X1.	Cytoskeleton-associated protein 5 isoform X1.	0.918
LOC106156234	LOC106156681	A0A1S3HP71	A0A1S3HN93	SLAIN motif-containing protein 2-like isoform X1.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.507
LOC106156234	LOC106158455	A0A1S3HP71	A0A1S3HV36	SLAIN motif-containing protein 2-like isoform X1.	tRNA (Adenine(37)-N6)-methyltransferase.	0.499
LOC106156234	LOC106163482	A0A1S3HP71	A0A1S3IE79	SLAIN motif-containing protein 2-like isoform X1.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.507
LOC106156234	LOC106164507	A0A1S3HP71	A0A1S3II35	SLAIN motif-containing protein 2-like isoform X1.	Cytoskeleton-associated protein 5-like.	0.918
LOC106156234	LOC106165228	A0A1S3HP71	A0A1S3ILM6	SLAIN motif-containing protein 2-like isoform X1.	Zinc finger CCCH domain-containing protein 18.	0.645
LOC106156234	LOC106170152	A0A1S3HP71	A0A1S3J4I8	SLAIN motif-containing protein 2-like isoform X1.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.577
LOC106156234	LOC106172199	A0A1S3HP71	A0A1S3JD68	SLAIN motif-containing protein 2-like isoform X1.	DNA ligase 1-like.	0.507
LOC106156234	LOC106176867	A0A1S3HP71	A0A1S3JWX4	SLAIN motif-containing protein 2-like isoform X1.	Methyltransferase-like 26 isoform X1.	0.551
LOC106156681	LOC106156234	A0A1S3HN93	A0A1S3HP71	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	SLAIN motif-containing protein 2-like isoform X1.	0.507
LOC106158455	LOC106156234	A0A1S3HV36	A0A1S3HP71	tRNA (Adenine(37)-N6)-methyltransferase.	SLAIN motif-containing protein 2-like isoform X1.	0.499
LOC106163482	LOC106156234	A0A1S3IE79	A0A1S3HP71	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	SLAIN motif-containing protein 2-like isoform X1.	0.507
LOC106164507	LOC106156234	A0A1S3II35	A0A1S3HP71	Cytoskeleton-associated protein 5-like.	SLAIN motif-containing protein 2-like isoform X1.	0.918
LOC106165228	LOC106156234	A0A1S3ILM6	A0A1S3HP71	Zinc finger CCCH domain-containing protein 18.	SLAIN motif-containing protein 2-like isoform X1.	0.645
LOC106165228	LOC106172199	A0A1S3ILM6	A0A1S3JD68	Zinc finger CCCH domain-containing protein 18.	DNA ligase 1-like.	0.545
LOC106170152	LOC106152466	A0A1S3J4I8	A0A1S3H7P6	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999