STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106161102Uncharacterized protein LOC106161102. (546 aa)    
Predicted Functional Partners:
LOC106159685
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.509
LOC106150762
Histone PARylation factor 1.
    
 
 0.503
LOC106166730
Uncharacterized protein LOC106166730 isoform X1.
    
 0.492
LOC106170125
poly(ADP-ribose) glycohydrolase-like.
    
 0.492
LOC106170124
poly(ADP-ribose) glycohydrolase-like isoform X1.
    
 0.492
LOC106177733
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 
 0.468
LOC106180270
cullin-4A; Belongs to the cullin family.
    
 0.458
LOC106159735
SUMO-conjugating enzyme UBC9-B isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.454
LOC106154235
Core histone macro-H2A.1 isoform X1; Belongs to the histone H2A family.
    
 
 0.449
LOC106158469
UV excision repair protein RAD23 homolog B.
   
 0.441
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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