STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106161965Ubiquitin carboxyl-terminal hydrolase 47 isoform X4; Belongs to the peptidase C19 family. (1393 aa)    
Predicted Functional Partners:
LOC106179131
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
  
 0.733
LOC106179840
E3 ubiquitin-protein ligase TRIP12-like.
   
  
 0.733
LOC106168230
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.630
LOC106181965
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.630
LOC106153752
Ubiquitinyl hydrolase 1.
   
  
 0.512
LOC106160796
F-box/WD repeat-containing protein 1A isoform X1.
    
 
 0.504
LOC106165400
Enkurin domain-containing protein 1-like.
    
 0.479
LOC106165052
Enkurin domain-containing protein 1-like.
    
 0.479
LOC106169975
DNA-directed DNA/RNA polymerase mu isoform X2; Belongs to the DNA polymerase type-X family.
    
 0.479
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.