STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106165859Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (330 aa)    
Predicted Functional Partners:
LOC106159308
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.992
LOC106167708
Geranylgeranyl transferase type-2 subunit alpha-like.
    
 0.992
LOC106162675
Protein prenyltransferase alpha subunit repeat-containing protein 1-A.
    
 0.984
LOC106160658
Ras-related protein ORAB-1.
    
 0.942
LOC106177911
Rab proteins geranylgeranyltransferase component A 2.
    
 0.932
LOC106162892
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.923
LOC106153596
Synaptobrevin homolog YKT6-like; Belongs to the synaptobrevin family.
    
 
 0.905
LOC106162893
Rab proteins geranylgeranyltransferase component A 1-like.
    
 0.898
LOC106181934
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.874
LOC106170712
Ras-related protein Rab-11A.
    
 0.825
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.