STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106166205Serine/threonine-protein phosphatase 1 regulatory subunit 10. (843 aa)    
Predicted Functional Partners:
LOC106162686
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.969
LOC106176873
Probable ATP-dependent RNA helicase DDX46 isoform X1.
   
 0.952
LOC106161465
Splicing factor 3A subunit 1-like.
   
 0.944
LOC106155817
Splicing factor 3A subunit 3.
   
 0.936
LOC106159376
Cell division cycle 5-like protein.
   
 
 0.863
LOC106167065
Cell division cycle 5-like protein.
   
 
 0.863
LOC106176064
Splicing factor 3B subunit 1.
   
 0.820
LOC106163802
Uncharacterized protein LOC106163802 isoform X1.
   
 0.750
LOC106164052
Splicing factor 3A subunit 2-like.
   
 0.750
LOC106167308
Uncharacterized protein LOC106167308.
   
 0.750
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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