STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106166176NF-X1-type zinc finger protein NFXL1. (890 aa)    
Predicted Functional Partners:
LOC106152466
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.841
LOC106151162
Peptidylprolyl isomerase.
   
 
 0.657
LOC106163585
Peptidylprolyl isomerase.
   
 
 0.657
LOC106155221
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
   0.633
LOC106174231
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
   0.633
LOC106176642
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
    
   0.633
LOC106153603
Receptor protein-tyrosine kinase.
      
 0.625
LOC106179865
60S ribosomal protein L7a-like.
    
 
 0.613
LOC106158469
UV excision repair protein RAD23 homolog B.
   
   0.593
LOC106180673
60S ribosomal protein L3-like; Belongs to the universal ribosomal protein uL3 family.
    
   0.593
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.