STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106167859Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (312 aa)    
Predicted Functional Partners:
LOC106180574
Heparan sulfate 2-O-sulfotransferase 1.
     
 0.858
LOC106163513
Peripheral plasma membrane protein CASK isoform X1; Belongs to the MAGUK family.
    
 0.831
LOC106171880
Peripheral plasma membrane protein CASK-like.
    
 0.831
LOC106172900
Peripheral plasma membrane protein CASK-like.
    
 0.831
LOC106175379
Protein let-756; Belongs to the heparin-binding growth factors family.
    
 0.812
LOC106178016
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase isoform X1.
     
 0.807
LOC106168414
Heparan sulfate glucosamine 3-O-sulfotransferase 6.
     
 0.791
LOC106168908
Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.
     
 0.751
LOC106177647
Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.
     
 0.751
LOC106160836
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.743
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.