STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106169436Protein FRG1-like. (265 aa)    
Predicted Functional Partners:
LOC106155019
pre-mRNA-splicing factor CWC22 homolog.
   
   0.975
LOC106152565
pre-mRNA-processing factor 19.
    
   0.835
LOC106162565
Small nuclear ribonucleoprotein F.
    
 
 0.746
LOC106170959
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 
 0.733
LOC106170598
pre-mRNA-processing-splicing factor 8 isoform X2.
    
 
 0.657
LOC106171260
pre-mRNA-processing-splicing factor 8-like.
    
 
 0.657
LOC106180025
116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1.
    
   0.646
LOC106156380
pre-mRNA-splicing factor SPF27-like.
   
 
 0.638
LOC106170224
pre-mRNA-splicing factor SYF2.
   
   0.637
LOC106176076
Corepressor interacting with RBPJ 1.
   
 
 0.634
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.