STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106170485F-box/WD repeat-containing protein 5. (767 aa)    
Predicted Functional Partners:
LOC106181029
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.962
LOC106170279
Cullin-1; Belongs to the cullin family.
    
 0.841
LOC106176654
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 
 0.809
LOC106164639
DNA damage-binding protein 1 isoform X1.
    
 
 0.768
LOC106150763
RING-box protein 1.
    
 0.669
LOC106180953
NEDD8.
    
 0.640
LOC106167662
LOW QUALITY PROTEIN: cullin-associated NEDD8-dissociated protein 1-like.
     
 0.631
LOC106159776
Proteasome maturation protein.
      
 0.626
LOC106161146
NEDD8-activating enzyme E1 regulatory subunit.
     
 0.616
LOC106178153
Uncharacterized protein LOC106178153.
    
 
 0.613
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.