STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106170598pre-mRNA-processing-splicing factor 8 isoform X2. (2347 aa)    
Predicted Functional Partners:
LOC106168771
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.995
LOC106180025
116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1.
   
 0.991
LOC106154191
pre-mRNA-processing factor 6 isoform X1.
   
 0.989
LOC106166161
Probable ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
   
 0.985
LOC106175601
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.985
LOC106160477
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 0.984
LOC106176784
Small nuclear ribonucleoprotein Sm D3.
   
 0.978
LOC106162565
Small nuclear ribonucleoprotein F.
   
 0.976
LOC106164370
Small nuclear ribonucleoprotein Sm D2.
   
 0.973
LOC106168885
Small nuclear ribonucleoprotein G.
   
 0.973
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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