LOC106170716 protein (Lingula anatina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106170716

Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family. (294 aa)

Predicted Functional Partners:

LOC106168418

0.510

LOC112041639

0.502

LOC106181516

0.485

LOC106160133

0.471

LOC106180843

0.461

Your Current Organism:

Lingula anatina

NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106160133	LOC106168418	A0A2R2MQ02	A0A2R2MQU1	Carnitine O-palmitoyltransferase 2, mitochondrial; Belongs to the carnitine/choline acetyltransferase family.	acyl-CoA synthetase family member 4.	0.658
LOC106160133	LOC106170716	A0A2R2MQ02	A0A1S3J6V5	Carnitine O-palmitoyltransferase 2, mitochondrial; Belongs to the carnitine/choline acetyltransferase family.	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.471
LOC106168418	LOC106160133	A0A2R2MQU1	A0A2R2MQ02	acyl-CoA synthetase family member 4.	Carnitine O-palmitoyltransferase 2, mitochondrial; Belongs to the carnitine/choline acetyltransferase family.	0.658
LOC106168418	LOC106170716	A0A2R2MQU1	A0A1S3J6V5	acyl-CoA synthetase family member 4.	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.510
LOC106170716	LOC106160133	A0A1S3J6V5	A0A2R2MQ02	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Carnitine O-palmitoyltransferase 2, mitochondrial; Belongs to the carnitine/choline acetyltransferase family.	0.471
LOC106170716	LOC106168418	A0A1S3J6V5	A0A2R2MQU1	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	acyl-CoA synthetase family member 4.	0.510
LOC106170716	LOC106180843	A0A1S3J6V5	A0A1S3KCT7	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Putative FERM domain-containing protein FRMD8P1 isoform X1.	0.461
LOC106170716	LOC106181516	A0A1S3J6V5	A0A1S3KFF6	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Sjoegren syndrome/scleroderma autoantigen 1 isoform X1.	0.485
LOC106170716	LOC112041639	A0A1S3J6V5	A0A2R2ML09	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Thiamin pyrophosphokinase 1-like.	0.502
LOC106180843	LOC106170716	A0A1S3KCT7	A0A1S3J6V5	Putative FERM domain-containing protein FRMD8P1 isoform X1.	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.461
LOC106180843	LOC106181516	A0A1S3KCT7	A0A1S3KFF6	Putative FERM domain-containing protein FRMD8P1 isoform X1.	Sjoegren syndrome/scleroderma autoantigen 1 isoform X1.	0.628
LOC106181516	LOC106170716	A0A1S3KFF6	A0A1S3J6V5	Sjoegren syndrome/scleroderma autoantigen 1 isoform X1.	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.485
LOC106181516	LOC106180843	A0A1S3KFF6	A0A1S3KCT7	Sjoegren syndrome/scleroderma autoantigen 1 isoform X1.	Putative FERM domain-containing protein FRMD8P1 isoform X1.	0.628
LOC112041639	LOC106170716	A0A2R2ML09	A0A1S3J6V5	Thiamin pyrophosphokinase 1-like.	Solute carrier family 25 member 45-like isoform X2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.502