STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106171136Probable ATP-dependent RNA helicase YTHDC2. (2108 aa)    
Predicted Functional Partners:
LOC106176107
Uncharacterized protein LOC106176107.
    
  0.930
LOC106154849
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.711
LOC106171681
Intersectin-1-like.
    
  0.700
LOC106176210
Intersectin-1.
    
  0.700
LOC106167180
poly(A) polymerase type 3.
   
 0.697
LOC106166778
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.675
LOC106169440
Cleavage stimulation factor subunit 1.
   
 
 0.673
LOC106178168
Cleavage stimulation factor subunit 3 isoform X1.
   
 
 0.673
LOC106173820
Cleavage and polyadenylation specificity factor subunit 1-like.
   
 
 0.655
LOC106180496
pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.
   
 0.654
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.