STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106172690Ubiquitin carboxyl-terminal hydrolase 19. (1272 aa)    
Predicted Functional Partners:
LOC106169956
Histone H2A deubiquitinase MYSM1.
   
 
 0.651
LOC106175920
28S ribosomal protein S9, mitochondrial.
   
 
 0.563
LOC106175715
39S ribosomal protein L3, mitochondrial.
   
 
 0.552
LOC106178176
39S ribosomal protein L21, mitochondrial.
   
 
 0.541
LOC106174231
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.538
LOC106170450
28S ribosomal protein S14, mitochondrial.
    
 
 0.534
LOC106178015
39S ribosomal protein L4, mitochondrial.
   
 
 0.524
LOC106156050
Hypoxia-inducible factor 1-alpha isoform X1.
    
 0.521
LOC106152557
Tyrosine--tRNA ligase.
   
  
 0.519
LOC106152550
Tyrosine--tRNA ligase.
   
  
 0.519
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.