STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106173978LOW QUALITY PROTEIN: negative elongation factor C/D-like. (572 aa)    
Predicted Functional Partners:
LOC106160767
Negative elongation factor B.
   
 0.992
LOC106160086
Negative elongation factor A.
    
 0.991
LOC106180791
Negative elongation factor E-like.
    
 0.990
LOC106178476
Transcription elongation factor SPT5.
    
 0.978
LOC106169073
DNA-directed RNA polymerase II subunit RPB3 isoform X1.
    
 0.955
LOC106168843
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
  0.953
LOC106162191
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.951
LOC106174063
DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1.
    
  0.950
LOC106164217
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.897
LOC106179848
DNA-directed RNA polymerases I, II, and III subunit RPABC3.
    
  0.897
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.