STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106174739serine--tRNA ligase, cytoplasmic. (507 aa)    
Predicted Functional Partners:
LOC106151138
L-seryl-tRNA(Sec) kinase.
     
 0.961
LOC106176195
Transcription initiation protein SPT3 homolog.
    
 
 0.842
LOC106165029
SAGA-associated factor 29.
    
 
 0.824
LOC106154948
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
   
 
 0.817
LOC106166403
Transcription initiation factor TFIID subunit 12 isoform X1.
    
 
 0.808
LOC106181657
Transcription initiation factor TFIID subunit 9B.
    
 
 0.808
LOC106169014
Transcriptional adapter 3.
    
 
 0.796
LOC106152557
Tyrosine--tRNA ligase.
  
  
 0.794
LOC106152550
Tyrosine--tRNA ligase.
  
  
 0.794
LOC106158877
glycine--tRNA ligase-like isoform X1.
   
  
 0.788
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.