STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106175630DEAD-box ATP-dependent RNA helicase 52C isoform X1. (836 aa)    
Predicted Functional Partners:
LOC106154191
pre-mRNA-processing factor 6 isoform X1.
   
 0.851
LOC106180025
116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1.
   
 0.847
LOC106164881
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.763
LOC106174465
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 
 0.720
LOC106168353
ATP synthase subunit d, mitochondrial.
   
   0.692
LOC106163848
ATP synthase subunit delta, mitochondrial-like.
   
 
 0.667
LOC106161998
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
  
0.657
LOC106166406
ATP synthase F(0) complex subunit B1, mitochondrial.
   
 
 0.641
LOC106165712
Tyrosine-protein kinase JAK2.
    
 0.639
LOC106176213
ATP synthase subunit O, mitochondrial.
  
 
 0.638
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.