STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106175777Collagen alpha-1(I) chain-like. (539 aa)    
Predicted Functional Partners:
LOC106157662
Collagen alpha-1(XIV) chain-like.
 
  
 
 0.629
LOC106171638
Collagen alpha-4(VI) chain isoform X2.
 
  
  0.623
LOC106154482
Collagen alpha-4(VI) chain-like.
 
  
  0.617
LOC106152560
Complement C1q tumor necrosis factor-related protein 3.
  
 
  0.572
LOC106176183
Collagen alpha-1(III) chain.
 
 
  0.570
LOC106176181
Collagen alpha-1(I) chain.
  
 
  0.570
LOC106176182
Collagen alpha-1(I) chain.
  
 
  0.570
LOC106178222
Uncharacterized protein.
 
 
  0.570
LOC106151324
Collagen alpha-1(I) chain-like.
  
 
  0.569
LOC106181001
Collagen alpha-1(I) chain.
  
 
  0.568
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.