STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106177716Histone H3.3. (84 aa)    
Predicted Functional Partners:
LOC106150927
Lysine-specific demethylase 6A.
   
 0.969
LOC106169775
Lysine-specific demethylase 6A-like.
   
 0.969
LOC106181631
Lysine-specific demethylase 6A isoform X3.
   
 0.969
LOC106170708
RNA polymerase-associated protein LEO1.
   
 
 0.948
LOC106162160
Lysine-specific demethylase 2B.
    
 0.936
LOC106177733
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
 
 
 0.926
LOC106159666
Histone H2B; Belongs to the histone H2B family.
 
 
 0.921
LOC106177035
Histone H2A; Belongs to the histone H2A family.
   
 0.909
LOC106154598
Histone-lysine N-methyltransferase SETD1B.
   
 0.887
LOC106152150
Uncharacterized protein LOC106152150.
   
 0.886
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.