STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106179987Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family. (155 aa)    
Predicted Functional Partners:
LOC106159127
RBR-type E3 ubiquitin transferase.
   
 0.988
LOC106164543
RBR-type E3 ubiquitin transferase.
   
 0.956
LOC106166390
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.956
LOC106152458
ubiquitin-40S ribosomal protein S27a.
   
 0.938
LOC106151787
E3 ubiquitin-protein ligase.
    
 0.924
LOC106173884
GDP-L-fucose synthase.
 
 
   0.897
LOC106180953
NEDD8.
   
 0.851
LOC106169942
Ubiquitin-conjugating enzyme E2 W.
     
0.844
LOC106160564
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.833
LOC106174203
Ubiquitin-conjugating enzyme E2 variant 2-like.
   
 0.833
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.