LOC106181491 protein (Lingula anatina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106181491

Nuclear pore complex protein Nup133. (1147 aa)

Predicted Functional Partners:

LOC106152313

0.999

LOC106170853

0.999

LOC106172199

0.999

LOC106177627

0.999

LOC106165963

0.998

LOC106172041

0.998

LOC106160528

0.997

LOC106180839

0.997

LOC106150711

0.994

LOC106154690

0.994

Your Current Organism:

Lingula anatina

NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106150711	LOC106152313	A0A1S3H1W4	A0A1S3H5P8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin Nup37.	0.998
LOC106150711	LOC106154690	A0A1S3H1W4	A0A1S3HEV2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup205.	0.985
LOC106150711	LOC106160528	A0A1S3H1W4	A0A1S3I2Z3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.981
LOC106150711	LOC106165963	A0A1S3H1W4	A0A1S3IPH1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin Nup43-like.	0.990
LOC106150711	LOC106170853	A0A1S3H1W4	A0A1S3J7B0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	E3 SUMO-protein ligase RanBP2.	0.996
LOC106150711	LOC106172041	A0A1S3H1W4	A0A1S3JCE9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.961
LOC106150711	LOC106172199	A0A1S3H1W4	A0A1S3JD68	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	DNA ligase 1-like.	0.999
LOC106150711	LOC106177627	A0A1S3H1W4	A0A1S3JZV8	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	RANBP2-like and GRIP domain-containing protein 5/6.	0.996
LOC106150711	LOC106180839	A0A1S3H1W4	A0A1S3KD63	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.981
LOC106150711	LOC106181491	A0A1S3H1W4	A0A1S3KFB7	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133.	0.994
LOC106152313	LOC106150711	A0A1S3H5P8	A0A1S3H1W4	Nucleoporin Nup37.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.998
LOC106152313	LOC106154690	A0A1S3H5P8	A0A1S3HEV2	Nucleoporin Nup37.	Nuclear pore complex protein Nup205.	0.977
LOC106152313	LOC106160528	A0A1S3H5P8	A0A1S3I2Z3	Nucleoporin Nup37.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC106152313	LOC106165963	A0A1S3H5P8	A0A1S3IPH1	Nucleoporin Nup37.	Nucleoporin Nup43-like.	0.999
LOC106152313	LOC106170853	A0A1S3H5P8	A0A1S3J7B0	Nucleoporin Nup37.	E3 SUMO-protein ligase RanBP2.	0.878
LOC106152313	LOC106172041	A0A1S3H5P8	A0A1S3JCE9	Nucleoporin Nup37.	Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.	0.985
LOC106152313	LOC106172199	A0A1S3H5P8	A0A1S3JD68	Nucleoporin Nup37.	DNA ligase 1-like.	0.545
LOC106152313	LOC106177627	A0A1S3H5P8	A0A1S3JZV8	Nucleoporin Nup37.	RANBP2-like and GRIP domain-containing protein 5/6.	0.878
LOC106152313	LOC106180839	A0A1S3H5P8	A0A1S3KD63	Nucleoporin Nup37.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC106152313	LOC106181491	A0A1S3H5P8	A0A1S3KFB7	Nucleoporin Nup37.	Nuclear pore complex protein Nup133.	0.999