STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106160477U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (503 aa)    
Predicted Functional Partners:
LOC106180025
116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1.
   
 0.990
LOC106154191
pre-mRNA-processing factor 6 isoform X1.
   
 0.989
LOC106170598
pre-mRNA-processing-splicing factor 8 isoform X2.
   
 0.984
LOC106171260
pre-mRNA-processing-splicing factor 8-like.
   
 0.984
LOC106166161
Probable ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
   
 0.979
LOC106173952
Splicing factor 3B subunit 3.
   
 
 0.979
LOC106175601
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.978
LOC106162565
Small nuclear ribonucleoprotein F.
   
 0.977
LOC106176784
Small nuclear ribonucleoprotein Sm D3.
   
 0.972
LOC106164370
Small nuclear ribonucleoprotein Sm D2.
   
 0.971
Your Current Organism:
Lingula anatina
NCBI taxonomy Id: 7574
Other names: L. anatina, Lingula lingua, Lingula unguis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.