Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
livH-4ABC-type branched-chain aminoacid transport system, permease component protein; Belongs to the binding-protein-dependent transport system permease family. (308 aa)    
Predicted Functional Partners:
livK-3
ABC-type branched-chain amino acid transport system, periplasmic component protein.
 
 
 0.994
livM-4
ABC-type branched-chain amino acid transport system, permease component protein; Belongs to the binding-protein-dependent transport system permease family.
 
0.984
livG-4
ABC-type branched-chain amino acid transport system, ATPase component protein.
 
  
 0.938
livF-4
ABC-type branched-chain amino acid transport system, ATPase component protein.
 
  
 0.926
livK-5
ABC-type branched-chain amino acid transport system, periplasmic component protein.
 
  
 0.896
ADJ65137.1
ABC-type amino acid transport system, permease component protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.847
livK-2
ABC-type branched-chain amino acid transport system, periplasmic component protein.
 
  
 0.837
livK
ABC-type branched-chain amino acid transport system, periplasmic component protein.
 
  
 0.835
ADJ64423.1
ABC-type amino acid transport system, ATPase component protein.
 
  
 0.832
livK-6
ABC-type branched-chain amino acid transport system, periplasmic component protein.
 
  
 0.830
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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