STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degQPeriplasmic trypsin-like serine protease, containing C-terminal PDZ domain protein; Belongs to the peptidase S1C family. (492 aa)    
Predicted Functional Partners:
ADJ62671.1
Serine proteinase protein.
  
  
 
0.929
rseA
Transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
 
 0.928
degQ-4
Periplasmic trypsin-like serine endoprotease protein; Belongs to the peptidase S1C family.
  
  
 
0.906
rseB
sigma-E factor regulatory (negative regulator) transcription regulator protein.
  
  
 0.799
ADJ63441.1
Conserved hypothetical protein; S - Function unknown.
  
   0.619
rplI
50S ribosomal subunit L9 protein; Binds to the 23S rRNA.
 
 
 
 0.587
rpoE-2
RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.578
glpK
Glycerol kinase protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.556
ADJ62761.1
DNA/RNA non-specific endonuclease protein.
  
 
 0.529
lepB
Signal peptidase I (SPase I) family protein; Belongs to the peptidase S26 family.
 
   
 0.494
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.