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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixNCbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family. (475 aa)    
Predicted Functional Partners:
fixP
Cbb3-type cytochrome c oxidase, subunit III transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 0.999
fixO
Cbb3-type cytochrome c oxidase, subunit II transmembrane protein.
 0.999
fixG
Iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
 
  
 0.991
coxB-3
Cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.985
coxB-2
Cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein.
   
 0.969
hemN-2
Oxygen-independent coproporphyrinogen III oxidase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.942
ADJ64688.1
Conserved hypothetical protein; S - Function unknown.
 
   
 0.936
coxB
Cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein.
  
 
 0.915
coxC
Cytochrome c oxidase subunit III transmembrane protein.
  
 
 0.915
coxA
Cytochrome c oxidase polypeptide I (cytochrome aa3 subunit 1) transmembrane protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
 0.908
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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