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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixICation transport P-type ATPase protein. (839 aa)    
Predicted Functional Partners:
ADJ64688.1
Conserved hypothetical protein; S - Function unknown.
 
   
 0.958
hemN-2
Oxygen-independent coproporphyrinogen III oxidase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.914
fixN
Cbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.897
fixS
Nitrogen fixation protein.
 
  
 0.896
fixG
Iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
 
  
 0.854
fixP
Cbb3-type cytochrome c oxidase, subunit III transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.826
fixO
Cbb3-type cytochrome c oxidase, subunit II transmembrane protein.
 
   
 0.822
copZ
Heavy metal transport/detoxification protein.
  
 
 0.809
ADJ64681.1
Conserved hypothetical protein; S - Function unknown.
 
  
 0.781
ADJ64680.1
Transmembrane protein.
     
 0.608
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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