close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemN-2Oxygen-independent coproporphyrinogen III oxidase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (483 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.969
hemF
Coproporphyrinogen III oxidase protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.950
ADJ64688.1
Conserved hypothetical protein; S - Function unknown.
 
   
 0.948
fixN
Cbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.942
ADJ62110.1
Inner membrane protein.
    
 0.925
fixI
Cation transport P-type ATPase protein.
 
  
 0.914
fixG
Iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
 
  
 0.898
fixO
Cbb3-type cytochrome c oxidase, subunit II transmembrane protein.
 
  
 0.884
ompW1
Outer membrane W protein; Identified by mass spectrometry.
 
  
 0.875
fixS
Nitrogen fixation protein.
 
    0.827
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.