Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hemN-2Oxygen-independent coproporphyrinogen III oxidase protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (483 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.968
ADJ64688.1
Conserved hypothetical protein; S - Function unknown.
 
   
 0.956
hemF
Coproporphyrinogen III oxidase protein; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
  
 0.948
fixN
Cbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.945
ADJ62110.1
Inner membrane protein.
    
 0.924
fixI
Cation transport P-type ATPase protein.
 
  
 0.920
fixS
Nitrogen fixation protein.
 
  
 0.912
fixG
Iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
 
  
 0.902
fixO
Cbb3-type cytochrome c oxidase, subunit II transmembrane protein.
 
  
 0.892
ompW1
Outer membrane W protein; Identified by mass spectrometry.
 
  
 0.792
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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