STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADJ65477.1enoyl-CoA hydratase/carnithine racemase protein. (259 aa)    
Predicted Functional Partners:
aidB-2
acyl-CoA dehydrogenase protein.
  
 0.946
paaH
3-hydroxyacyl-CoA dehydrogenase protein.
 0.892
paaJ-2
acetyl-CoA acetyltransferase (thiolase) protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.848
ADJ62444.1
acyl-CoA dehydrogenase oxidoreductase protein.
 
 0.844
pacF1
3-oxoadipyl-CoA thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.830
ADJ62454.1
acyl-CoA dehydrogenase protein.
 
 0.819
ahcY
Adenosylhomocysteinase protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
 0.816
metH
Methionine synthase I, cobalamin-binding domain protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.812
ADJ65478.1
Long chain acyl-CoA synthetase protein.
 
 
 0.809
metE
Methionine synthase II protein.
     
 0.806
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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