scyTo_0012656 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0012656

F-box domain-containing protein. (153 aa)

Predicted Functional Partners:

scyTo_0011681

0.533

scyTo_0012426

0.514

scyTo_0005556

0.499

scyTo_0005553

0.491

scyTo_0005552

0.457

scyTo_0020848

0.454

scyTo_0014495

0.453

scyTo_0006024

0.453

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0005552	scyTo_0005553	A0A401P9S1	A0A401P9U6	WD_REPEATS_REGION domain-containing protein.	KH domain-containing protein.	0.516
scyTo_0005552	scyTo_0005556	A0A401P9S1	A0A401P9X2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.459
scyTo_0005552	scyTo_0012656	A0A401P9S1	A0A401NGU4	WD_REPEATS_REGION domain-containing protein.	F-box domain-containing protein.	0.457
scyTo_0005553	scyTo_0005552	A0A401P9U6	A0A401P9S1	KH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.516
scyTo_0005553	scyTo_0005556	A0A401P9U6	A0A401P9X2	KH domain-containing protein.	Uncharacterized protein.	0.459
scyTo_0005553	scyTo_0012656	A0A401P9U6	A0A401NGU4	KH domain-containing protein.	F-box domain-containing protein.	0.491
scyTo_0005556	scyTo_0005552	A0A401P9X2	A0A401P9S1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.459
scyTo_0005556	scyTo_0005553	A0A401P9X2	A0A401P9U6	Uncharacterized protein.	KH domain-containing protein.	0.459
scyTo_0005556	scyTo_0012656	A0A401P9X2	A0A401NGU4	Uncharacterized protein.	F-box domain-containing protein.	0.499
scyTo_0006024	scyTo_0012656	A0A401PEW5	A0A401NGU4	F-box domain-containing protein.	F-box domain-containing protein.	0.453
scyTo_0006024	scyTo_0014495	A0A401PEW5	A0A401NNJ5	F-box domain-containing protein.	Uncharacterized protein.	0.701
scyTo_0011681	scyTo_0012426	A0A401NSS5	A0A401P8L9	Uncharacterized protein.	DH domain-containing protein.	0.512
scyTo_0011681	scyTo_0012656	A0A401NSS5	A0A401NGU4	Uncharacterized protein.	F-box domain-containing protein.	0.533
scyTo_0012426	scyTo_0011681	A0A401P8L9	A0A401NSS5	DH domain-containing protein.	Uncharacterized protein.	0.512
scyTo_0012426	scyTo_0012656	A0A401P8L9	A0A401NGU4	DH domain-containing protein.	F-box domain-containing protein.	0.514
scyTo_0012656	scyTo_0005552	A0A401NGU4	A0A401P9S1	F-box domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.457
scyTo_0012656	scyTo_0005553	A0A401NGU4	A0A401P9U6	F-box domain-containing protein.	KH domain-containing protein.	0.491
scyTo_0012656	scyTo_0005556	A0A401NGU4	A0A401P9X2	F-box domain-containing protein.	Uncharacterized protein.	0.499
scyTo_0012656	scyTo_0006024	A0A401NGU4	A0A401PEW5	F-box domain-containing protein.	F-box domain-containing protein.	0.453
scyTo_0012656	scyTo_0011681	A0A401NGU4	A0A401NSS5	F-box domain-containing protein.	Uncharacterized protein.	0.533