scyTo_0009124 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0009124

Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)

Predicted Functional Partners:

scyTo_0013623

0.887

scyTo_0015996

0.741

scyTo_0016275

0.741

scyTo_0000403

0.696

scyTo_0002705

0.687

scyTo_0019282

0.679

scyTo_0017342

0.676

scyTo_0016077

0.674

scyTo_0024853

0.674

scyTo_0020500

0.671

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0000403	scyTo_0002705	A0A401NWM6	A0A401PKJ2	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.998
scyTo_0000403	scyTo_0009124	A0A401NWM6	A0A401NGZ4	Uncharacterized protein.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.696
scyTo_0000403	scyTo_0013623	A0A401NWM6	A0A401P146	Uncharacterized protein.	Uncharacterized protein.	0.703
scyTo_0000403	scyTo_0015996	A0A401NWM6	A0A401Q2E8	Uncharacterized protein.	RIC1 domain-containing protein.	0.717
scyTo_0000403	scyTo_0016077	A0A401NWM6	A0A401Q3P5	Uncharacterized protein.	Uncharacterized protein.	0.986
scyTo_0000403	scyTo_0016275	A0A401NWM6	A0A401Q5D9	Uncharacterized protein.	Uncharacterized protein.	0.717
scyTo_0000403	scyTo_0017342	A0A401NWM6	A0A401PQL4	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.998
scyTo_0000403	scyTo_0019282	A0A401NWM6	A0A401PWB6	Uncharacterized protein.	Uncharacterized protein.	0.997
scyTo_0000403	scyTo_0020500	A0A401NWM6	A0A401PU65	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.871
scyTo_0000403	scyTo_0024853	A0A401NWM6	A0A401QFD7	Uncharacterized protein.	Uncharacterized protein.	0.986
scyTo_0002705	scyTo_0000403	A0A401PKJ2	A0A401NWM6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.998
scyTo_0002705	scyTo_0009124	A0A401PKJ2	A0A401NGZ4	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	0.687
scyTo_0002705	scyTo_0013623	A0A401PKJ2	A0A401P146	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.910
scyTo_0002705	scyTo_0015996	A0A401PKJ2	A0A401Q2E8	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	RIC1 domain-containing protein.	0.817
scyTo_0002705	scyTo_0016077	A0A401PKJ2	A0A401Q3P5	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.990
scyTo_0002705	scyTo_0016275	A0A401PKJ2	A0A401Q5D9	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.817
scyTo_0002705	scyTo_0017342	A0A401PKJ2	A0A401PQL4	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.999
scyTo_0002705	scyTo_0019282	A0A401PKJ2	A0A401PWB6	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.998
scyTo_0002705	scyTo_0020500	A0A401PKJ2	A0A401PU65	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.950
scyTo_0002705	scyTo_0024853	A0A401PKJ2	A0A401QFD7	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Uncharacterized protein.	0.990