STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0012718Rhomboid domain-containing protein. (352 aa)    
Predicted Functional Partners:
scyTo_0012015
PHB domain-containing protein.
  
 0.857
scyTo_0008744
AAA domain-containing protein.
  
 
 0.836
scyTo_0024569
Prohibitin.
  
 0.801
scyTo_0016862
AAA domain-containing protein.
  
 
 0.719
scyTo_0004725
Prohibitin.
  
 0.704
scyTo_0011809
Protein kinase domain-containing protein.
    
 
 0.700
scyTo_0012691
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 
 0.689
scyTo_0010429
AAA domain-containing protein.
  
 
 0.689
scyTo_0011822
Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
 0.687
scyTo_0008923
PHB domain-containing protein.
  
 0.631
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.