STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0011132NFRKB_winged domain-containing protein. (1021 aa)    
Predicted Functional Partners:
scyTo_0006922
Uncharacterized protein; Belongs to the actin family.
   
 0.998
scyTo_0012465
Ubiquitin carboxyl-terminal hydrolase.
    
 0.986
scyTo_0020299
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
   
 0.982
scyTo_0008812
Uncharacterized protein.
   
 0.979
scyTo_0017507
Helicase C-terminal domain-containing protein.
   
 0.979
scyTo_0018719
Uncharacterized protein.
    
 0.976
scyTo_0019532
YL1_C domain-containing protein.
    
 0.963
scyTo_0007795
Uncharacterized protein.
    
 0.953
scyTo_0025180
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 0.953
scyTo_0013613
Uncharacterized protein.
    
 0.952
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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