STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0003962C1q domain-containing protein. (313 aa)    
Predicted Functional Partners:
scyTo_0008024
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.958
scyTo_0015006
RING-CH-type domain-containing protein.
    
 
 0.880
scyTo_0003284
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
 0.880
scyTo_0007632
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.864
scyTo_0017490
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.847
scyTo_0010062
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.845
scyTo_0002847
E2_bind domain-containing protein.
   
 0.810
scyTo_0021764
Uncharacterized protein.
    
 0.808
scyTo_0008372
ThiF domain-containing protein.
    
 0.803
scyTo_0026815
Uncharacterized protein.
     
 0.802
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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