scyTo_0011153 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0011153

POLXc domain-containing protein. (183 aa)

Predicted Functional Partners:

scyTo_0023022

0.891

scyTo_0021727

0.891

scyTo_0017934

0.872

scyTo_0009197

0.858

scyTo_0020505

0.817

scyTo_0017609

0.817

scyTo_0023739

0.812

scyTo_0015160

0.788

scyTo_0003575

0.780

scyTo_0022972

0.780

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003575	scyTo_0009197	A0A401PN00	A0A401NIA2	XPGI domain-containing protein.	DNA ligase.	0.949
scyTo_0003575	scyTo_0011153	A0A401PN00	A0A401NI59	XPGI domain-containing protein.	POLXc domain-containing protein.	0.780
scyTo_0003575	scyTo_0015160	A0A401PN00	A0A401P3Y0	XPGI domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.999
scyTo_0003575	scyTo_0017609	A0A401PN00	A0A401PWK1	XPGI domain-containing protein.	Uncharacterized protein.	0.435
scyTo_0003575	scyTo_0017934	A0A401PN00	A0A401Q2T8	XPGI domain-containing protein.	DNA ligase.	0.927
scyTo_0003575	scyTo_0020505	A0A401PN00	A0A401PUA3	XPGI domain-containing protein.	Uncharacterized protein.	0.435
scyTo_0003575	scyTo_0021727	A0A401PN00	A0A401QBI2	XPGI domain-containing protein.	BRCT domain-containing protein.	0.817
scyTo_0003575	scyTo_0023022	A0A401PN00	A0A401Q8K2	XPGI domain-containing protein.	Uncharacterized protein.	0.817
scyTo_0003575	scyTo_0023739	A0A401PN00	A0A401QCX9	XPGI domain-containing protein.	Uncharacterized protein.	0.778
scyTo_0009197	scyTo_0003575	A0A401NIA2	A0A401PN00	DNA ligase.	XPGI domain-containing protein.	0.949
scyTo_0009197	scyTo_0011153	A0A401NIA2	A0A401NI59	DNA ligase.	POLXc domain-containing protein.	0.858
scyTo_0009197	scyTo_0015160	A0A401NIA2	A0A401P3Y0	DNA ligase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.991
scyTo_0009197	scyTo_0017609	A0A401NIA2	A0A401PWK1	DNA ligase.	Uncharacterized protein.	0.939
scyTo_0009197	scyTo_0017934	A0A401NIA2	A0A401Q2T8	DNA ligase.	DNA ligase.	0.456
scyTo_0009197	scyTo_0020505	A0A401NIA2	A0A401PUA3	DNA ligase.	Uncharacterized protein.	0.939
scyTo_0009197	scyTo_0021727	A0A401NIA2	A0A401QBI2	DNA ligase.	BRCT domain-containing protein.	0.989
scyTo_0009197	scyTo_0022972	A0A401NIA2	A0A401Q746	DNA ligase.	Uncharacterized protein.	0.940
scyTo_0009197	scyTo_0023022	A0A401NIA2	A0A401Q8K2	DNA ligase.	Uncharacterized protein.	0.989
scyTo_0009197	scyTo_0023739	A0A401NIA2	A0A401QCX9	DNA ligase.	Uncharacterized protein.	0.959
scyTo_0011153	scyTo_0003575	A0A401NI59	A0A401PN00	POLXc domain-containing protein.	XPGI domain-containing protein.	0.780