STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0006937Uncharacterized protein. (325 aa)    
Predicted Functional Partners:
scyTo_0007048
Rhodanese domain-containing protein.
    
  0.878
scyTo_0007864
RRM domain-containing protein.
  
 0.877
scyTo_0002200
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.835
scyTo_0010246
Uncharacterized protein.
   
 0.826
scyTo_0012393
Uncharacterized protein.
  
 0.814
scyTo_0010893
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
  
 
 0.804
scyTo_0019042
Uncharacterized protein.
   
 0.803
scyTo_0000719
RRM domain-containing protein.
  
 0.799
scyTo_0007034
RRM domain-containing protein.
  
 
 0.792
scyTo_0024635
Uncharacterized protein.
  
 
 0.791
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.