scyTo_0014246 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0014246

Uncharacterized protein. (147 aa)

Predicted Functional Partners:

scyTo_0010012

0.999

scyTo_0006696

0.999

scyTo_0002853

0.999

scyTo_0002883

0.999

scyTo_0020720

0.999

scyTo_0013997

0.998

scyTo_0018596

0.998

scyTo_0007245

0.997

scyTo_0000646

0.997

scyTo_0013818

0.997

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0000646	scyTo_0002853	A0A401P133	A0A401PL09	PCI domain-containing protein.	Proteasome subunit alpha type.	0.999
scyTo_0000646	scyTo_0002883	A0A401P133	A0A401PL36	PCI domain-containing protein.	Uncharacterized protein.	0.999
scyTo_0000646	scyTo_0006696	A0A401P133	A0A401PJH5	PCI domain-containing protein.	Proteasome subunit alpha type.	0.999
scyTo_0000646	scyTo_0007245	A0A401P133	A0A401NNU4	PCI domain-containing protein.	Proteasome subunit alpha type.	0.996
scyTo_0000646	scyTo_0010012	A0A401P133	A0A401NY42	PCI domain-containing protein.	Proteasome subunit alpha type.	0.999
scyTo_0000646	scyTo_0013818	A0A401P133	A0A401P5H1	PCI domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
scyTo_0000646	scyTo_0013997	A0A401P133	A0A401NG18	PCI domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
scyTo_0000646	scyTo_0014246	A0A401P133	A0A401NJ43	PCI domain-containing protein.	Uncharacterized protein.	0.997
scyTo_0000646	scyTo_0018596	A0A401P133	A0A401PYX9	PCI domain-containing protein.	Proteasome subunit alpha type.	0.999
scyTo_0000646	scyTo_0020720	A0A401P133	A0A401Q0I2	PCI domain-containing protein.	Proteasome subunit beta.	0.999
scyTo_0002853	scyTo_0000646	A0A401PL09	A0A401P133	Proteasome subunit alpha type.	PCI domain-containing protein.	0.999
scyTo_0002853	scyTo_0002883	A0A401PL09	A0A401PL36	Proteasome subunit alpha type.	Uncharacterized protein.	0.999
scyTo_0002853	scyTo_0006696	A0A401PL09	A0A401PJH5	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
scyTo_0002853	scyTo_0007245	A0A401PL09	A0A401NNU4	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
scyTo_0002853	scyTo_0010012	A0A401PL09	A0A401NY42	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
scyTo_0002853	scyTo_0013818	A0A401PL09	A0A401P5H1	Proteasome subunit alpha type.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
scyTo_0002853	scyTo_0013997	A0A401PL09	A0A401NG18	Proteasome subunit alpha type.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
scyTo_0002853	scyTo_0014246	A0A401PL09	A0A401NJ43	Proteasome subunit alpha type.	Uncharacterized protein.	0.999
scyTo_0002853	scyTo_0018596	A0A401PL09	A0A401PYX9	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
scyTo_0002853	scyTo_0020720	A0A401PL09	A0A401Q0I2	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999