STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scyTo_0014268S1-like domain-containing protein; Belongs to the eIF-1A family. (105 aa)    
Predicted Functional Partners:
scyTo_0012694
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 0.999
scyTo_0010859
Uncharacterized protein.
  
 0.999
scyTo_0006994
S4 RNA-binding domain-containing protein.
  
 0.998
scyTo_0008458
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
 0.998
scyTo_0002944
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
  
 0.998
scyTo_0015814
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
  
 0.998
scyTo_0022866
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
  
 0.998
scyTo_0005470
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
  
 0.997
scyTo_0017907
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
  
 0.997
scyTo_0013777
Uncharacterized protein.
  
 0.996
Your Current Organism:
Scyliorhinus torazame
NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark
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