scyTo_0009390 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0009390

Uncharacterized protein. (346 aa)

Predicted Functional Partners:

scyTo_0013011

0.899

scyTo_0019106

0.852

scyTo_0024669

0.850

scyTo_0010829

0.844

scyTo_0013618

0.835

scyTo_0005494

0.824

scyTo_0013414

0.799

scyTo_0003716

0.786

scyTo_0025425

0.786

scyTo_0004122

0.784

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003716	scyTo_0009390	A0A401PND7	A0A401NLC4	Hexosyltransferase.	Uncharacterized protein.	0.786
scyTo_0003716	scyTo_0010829	A0A401PND7	A0A401PC32	Hexosyltransferase.	Gb3_synth domain-containing protein.	0.634
scyTo_0003716	scyTo_0013011	A0A401PND7	A0A401NMC3	Hexosyltransferase.	Uncharacterized protein.	0.509
scyTo_0003716	scyTo_0024669	A0A401PND7	A0A401QF00	Hexosyltransferase.	Uncharacterized protein.	0.653
scyTo_0003716	scyTo_0025425	A0A401PND7	A0A401QHI0	Hexosyltransferase.	Hexosyltransferase.	0.874
scyTo_0004122	scyTo_0009390	A0A401NL50	A0A401NLC4	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	Uncharacterized protein.	0.784
scyTo_0005494	scyTo_0009390	A0A401P8P0	A0A401NLC4	Hexosyltransferase.	Uncharacterized protein.	0.824
scyTo_0005494	scyTo_0010829	A0A401P8P0	A0A401PC32	Hexosyltransferase.	Gb3_synth domain-containing protein.	0.634
scyTo_0005494	scyTo_0013011	A0A401P8P0	A0A401NMC3	Hexosyltransferase.	Uncharacterized protein.	0.509
scyTo_0005494	scyTo_0024669	A0A401P8P0	A0A401QF00	Hexosyltransferase.	Uncharacterized protein.	0.714
scyTo_0009390	scyTo_0003716	A0A401NLC4	A0A401PND7	Uncharacterized protein.	Hexosyltransferase.	0.786
scyTo_0009390	scyTo_0004122	A0A401NLC4	A0A401NL50	Uncharacterized protein.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.784
scyTo_0009390	scyTo_0005494	A0A401NLC4	A0A401P8P0	Uncharacterized protein.	Hexosyltransferase.	0.824
scyTo_0009390	scyTo_0010829	A0A401NLC4	A0A401PC32	Uncharacterized protein.	Gb3_synth domain-containing protein.	0.844
scyTo_0009390	scyTo_0013011	A0A401NLC4	A0A401NMC3	Uncharacterized protein.	Uncharacterized protein.	0.899
scyTo_0009390	scyTo_0013414	A0A401NLC4	A0A401NW41	Uncharacterized protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.799
scyTo_0009390	scyTo_0013618	A0A401NLC4	A0A401P120	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.835
scyTo_0009390	scyTo_0019106	A0A401NLC4	A0A401PSZ9	Uncharacterized protein.	Uncharacterized protein.	0.852
scyTo_0009390	scyTo_0024669	A0A401NLC4	A0A401QF00	Uncharacterized protein.	Uncharacterized protein.	0.850
scyTo_0009390	scyTo_0025425	A0A401NLC4	A0A401QHI0	Uncharacterized protein.	Hexosyltransferase.	0.786