scyTo_0011410 protein (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

scyTo_0011410

Uncharacterized protein. (396 aa)

Predicted Functional Partners:

scyTo_0012271

0.703

scyTo_0009543

0.702

scyTo_0014009

0.697

scyTo_0005726

0.686

scyTo_0017448

0.686

scyTo_0012482

0.684

scyTo_0001286

0.675

scyTo_0007873

0.598

scyTo_0020604

0.568

scyTo_0016644

0.551

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0001286	scyTo_0011410	A0A401PBE4	A0A401NM93	RRM domain-containing protein.	Uncharacterized protein.	0.675
scyTo_0001286	scyTo_0012271	A0A401PBE4	A0A401P5I3	RRM domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.780
scyTo_0005726	scyTo_0007873	A0A401PBX3	A0A401NZT3	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
scyTo_0005726	scyTo_0009543	A0A401PBX3	A0A401NNX8	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
scyTo_0005726	scyTo_0011410	A0A401PBX3	A0A401NM93	Sas10 domain-containing protein.	Uncharacterized protein.	0.686
scyTo_0005726	scyTo_0012271	A0A401PBX3	A0A401P5I3	Sas10 domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.923
scyTo_0005726	scyTo_0012482	A0A401PBX3	A0A401P9D0	Sas10 domain-containing protein.	NUC153 domain-containing protein.	0.998
scyTo_0005726	scyTo_0014009	A0A401PBX3	A0A401NG86	Sas10 domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.991
scyTo_0005726	scyTo_0016644	A0A401PBX3	A0A401PVM3	Sas10 domain-containing protein.	TRASH domain-containing protein.	0.907
scyTo_0005726	scyTo_0017448	A0A401PBX3	A0A401PT46	Sas10 domain-containing protein.	Brix domain-containing protein.	0.951
scyTo_0005726	scyTo_0020604	A0A401PBX3	A0A401PX99	Sas10 domain-containing protein.	Uncharacterized protein.	0.943
scyTo_0007873	scyTo_0005726	A0A401NZT3	A0A401PBX3	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.999
scyTo_0007873	scyTo_0009543	A0A401NZT3	A0A401NNX8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
scyTo_0007873	scyTo_0011410	A0A401NZT3	A0A401NM93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.598
scyTo_0007873	scyTo_0012271	A0A401NZT3	A0A401P5I3	WD_REPEATS_REGION domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.939
scyTo_0007873	scyTo_0012482	A0A401NZT3	A0A401P9D0	WD_REPEATS_REGION domain-containing protein.	NUC153 domain-containing protein.	0.999
scyTo_0007873	scyTo_0014009	A0A401NZT3	A0A401NG86	WD_REPEATS_REGION domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.993
scyTo_0007873	scyTo_0016644	A0A401NZT3	A0A401PVM3	WD_REPEATS_REGION domain-containing protein.	TRASH domain-containing protein.	0.853
scyTo_0007873	scyTo_0017448	A0A401NZT3	A0A401PT46	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.949
scyTo_0007873	scyTo_0020604	A0A401NZT3	A0A401PX99	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.925